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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
63
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
266
DNA accessibility
63
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
56
November, 2017
19
September, 2020
9
August, 2017
9
November, 2018
7
October, 2019
1
November, 2020
Available data
3014
bam
2722
bigWig
1600
tsv
1377
bed narrowPeak
1240
fastq
800
bigBed narrowPeak
286
bed broadPeak
269
bigBed broadPeak
261
bed bed3+
251
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
422
Homo sapiens
Biosample type
194
primary cell
176
tissue
51
cell line
1
in vitro differentiated cells
Organ
100
epithelium
87
pancreas
78
kidney
55
liver
38
brain
36
limb
33
musculature of body
30
heart
18
ureter
15
vasculature
11
blood vessel
9
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
269
AMP
153
HPAP
Genome assembly (visualization)
254
GRCh38
246
hg19
Lab
269
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
422 results
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DNase-seq
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
7
pancreatic acinar cell
4
+ See 22 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
50
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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