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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
19
RRBS
5
Hi-C
Assay category
77
DNA methylation
60
DNA accessibility
52
Transcription
5
3D chromatin structure
Date released
134
May, 2022
27
July, 2019
19
September, 2020
7
November, 2018
6
August, 2017
1
October, 2019
Available data
3014
bam
2742
bigWig
1600
tsv
1397
bed narrowPeak
1240
fastq
800
bigBed narrowPeak
286
bed broadPeak
269
bigBed broadPeak
261
bed bed3+
251
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
194
Homo sapiens
Biosample type
167
primary cell
25
tissue
2
cell line
Organ
88
epithelium
87
pancreas
8
heart
5
brain
4
connective tissue
4
kidney
4
liver
4
musculature of body
4
vasculature
3
blood vessel
2
adipose tissue
2
spleen
1
eye
1
limb
1
pericardium
Project
153
HPAP
41
AMP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
153
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
194 results
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Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
astrocyte of the cerebellum
1
+ See 13 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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