Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
23
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
41
DNA accessibility
23
DNA binding
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
broad histone mark
12
control
11
narrow histone mark
Date released
32
June, 2019
27
October, 2019
6
February, 2021
5
July, 2019
3
May, 2019
2
February, 2020
Available data
68
bam
51
bed narrowPeak
50
bigWig
44
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
75
tissue
Organ
868
pancreas
709
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
55
GRCh38
55
hg19
Lab
75
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
lab.title!
Karen Mohlke, UNC
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
75 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
19
1
5
muscle of arm
17
muscle of leg
13
3
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 8 more…
See all biosamples
Download