Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
36
DNase-seq
21
total RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
50
DNA binding
44
DNA accessibility
21
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
61
histone modification
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
39
October, 2019
32
June, 2019
12
December, 2017
10
February, 2018
8
August, 2021
6
February, 2021
5
July, 2019
3
February, 2020
3
May, 2019
2
May, 2021
1
January, 2018
Available data
112
bam
82
bigWig
68
bed narrowPeak
50
bigBed narrowPeak
38
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
23
fastq
21
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
88
tissue
25
in vitro differentiated cells
8
cell line
Organ
868
pancreas
709
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
87
GRCh38
87
hg19
1
hg18
Lab
121
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
121 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
tissue
tibial nerve
19
2
5
1
muscle of arm
17
muscle of leg
3
13
1
tibial artery
9
2
1
1
gastrocnemius medialis
1
4
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
See all biosamples
Download