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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
21
ATAC-seq
17
ChIP-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
30
Transcription
21
DNA accessibility
17
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
broad histone mark
Date released
40
May, 2022
35
August, 2021
2
March, 2019
Available data
33
bed narrowPeak
33
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
77
Homo sapiens
Biosample type
44
tissue
33
cell line
Organ
70
liver
4
pancreas
2
kidney
Project
77
AMP
Genome assembly (visualization)
36
hg19
1
GRCh38
Lab
3506
AMP-T2D consortium
324
Klaus Kaestner, Upenn
269
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
islet of Langerhans
1
1
2
cell line
HepG2
9
17
2
1
1
HEK293T
2
Synthesized DNA
1
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