Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
97
ChIP-seq
35
ATAC-seq
18
snATAC-seq
17
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
125
Transcription
97
DNA binding
53
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
137
histone
137
histone modification
broad histone mark
62
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
161
May, 2021
45
May, 2020
35
August, 2021
24
May, 2022
23
February, 2023
16
January, 2021
2
March, 2019
Available data
169
bigWig
160
bam
106
tsv
81
bed narrowPeak
40
tagAlign
24
fastq
6
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
306
Homo sapiens
Biosample type
175
primary cell
56
tissue
38
cell line
37
in vitro differentiated cells
Organ
55
pancreas
30
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
192
T1D
114
AMP
Genome assembly (visualization)
190
hg19
137
GRCh38
Lab
3506
AMP-T2D consortium
324
Klaus Kaestner, Upenn
269
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
306 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
whole genome sequencing assay
primary cell
monocyte
53
40
1
CD8-positive, alpha-beta T cell
4
13
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
12
30
6
2
pancreas
1
4
thymus
1
cell line
HepG2
9
17
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
embryonic stem cell
5
27
5
See all biosamples
Download