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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
490
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
490
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
53
December, 2017
53
November, 2018
40
May, 2022
35
August, 2017
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
649
bam
577
bigWig
440
fastq
397
bed narrowPeak
337
bigBed narrowPeak
165
tsv
65
tagAlign
55
bed broadPeak
55
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
716
Homo sapiens
Biosample type
362
cell line
336
tissue
10
primary cell
8
in vitro differentiated cells
Organ
864
pancreas
716
liver
635
connective tissue
475
epithelium
470
adipose tissue
224
heart
216
brain
209
kidney
185
vasculature
179
blood vessel
159
bone element
125
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
27
nerve
25
embryo
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
716
AMP
Genome assembly (visualization)
579
hg19
501
GRCh38
Lab
676
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
month_released!
August, 2021
BIOSAMPLE
ASSAY
716 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
352
5
1
1
1
2
tissue
liver
123
167
20
2
3
1
1
1
1
1
right lobe of liver
7
3
1
2
1
2
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
8
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