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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
40
DNA binding
Target of assay
29
histone
29
histone modification
25
transcription factor
15
narrow histone mark
broad histone mark
13
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
13
August, 2017
6
December, 2017
5
November, 2018
February, 2018
1
October, 2018
Available data
40
bam
40
bigWig
40
fastq
39
bed narrowPeak
23
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3+
5
tagAlign
Organism
40
Homo sapiens
Biosample type
20
cell line
11
in vitro differentiated cells
5
primary cell
3
tissue
1
stem cell
Organ
21
liver
6
connective tissue
6
pancreas
5
epithelium
2
embryo
Project
40
AMP
Genome assembly (visualization)
40
hg19
37
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
40
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
target.investigated_as!
broad histone mark
month_released!
February, 2018
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
6
Hepatic endoderm
1
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
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primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
body of pancreas
1
liver
1
pancreas
1
stem cell
hESC
1
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