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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
187
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
199
histone modification
198
histone
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
356
November, 2017
291
August, 2017
289
May, 2021
241
May, 2020
228
August, 2021
226
October, 2019
168
July, 2018
101
May, 2022
100
February, 2023
100
July, 2019
79
December, 2017
78
November, 2018
62
May, 2019
60
March, 2020
57
October, 2018
56
September, 2020
49
April, 2018
47
September, 2023
43
April, 2019
42
September, 2018
35
December, 2018
31
February, 2018
29
November, 2019
26
January, 2019
25
February, 2020
23
June, 2019
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
5
October, 2017
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
229
fastq
223
bam
201
bigWig
89
tsv
76
bed narrowPeak
40
tagAlign
27
bed bed3+
17
bed broadPeak
14
bigBed narrowPeak
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
288
Homo sapiens
Biosample type
206
tissue
47
in vitro differentiated cells
38
primary cell
Organ
151
pancreas
83
connective tissue
36
adipose tissue
33
liver
20
epithelium
14
musculature of body
Project
291
AMP
Genome assembly (visualization)
205
hg19
193
GRCh38
Lab
291
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
291 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
28
89
liver
29
3
1
subcutaneous abdominal adipose tissue
16
3
skeletal muscle tissue
10
4
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
47
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
skeletal muscle myoblast
9
1
pancreatic endocrine cell
8
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