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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
1
Hi-C
1
pCHi-C
1
total RNA-seq
Assay category
53
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
33
transcription factor
17
histone
17
histone modification
13
control
broad histone mark
7
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
307
November, 2017
194
May, 2020
53
December, 2017
53
November, 2018
40
May, 2022
35
August, 2017
33
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
54
bam
53
fastq
41
bigWig
40
bed narrowPeak
40
bigBed narrowPeak
2
tsv
1
bedpe bed3+
1
hic
Organism
56
Homo sapiens
Biosample type
48
tissue
8
in vitro differentiated cells
Organ
56
liver
18
epithelium
14
pancreas
12
embryo
7
heart
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
56
AMP
Genome assembly (visualization)
42
hg19
41
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
27
inconsistent control
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
tissue
liver
38
1
1
1
right lobe of liver
7
in vitro differentiated cells
hepatocyte
8
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