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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
15
ChIP-seq
Assay category
113
DNA accessibility
87
Transcription
41
DNA methylation
15
DNA binding
Target of assay
32
histone
32
histone modification
broad histone mark
15
narrow histone mark
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
80
fastq
79
bam
75
bigWig
67
bed narrowPeak
26
tsv
14
bigBed narrowPeak
7
txt
1
bed bed3+
1
csv
Organism
256
Homo sapiens
Biosample type
190
primary cell
66
tissue
Organ
159
pancreas
131
epithelium
40
liver
2
musculature of body
Project
134
HPAP
122
AMP
Genome assembly (visualization)
94
hg19
55
GRCh38
Lab
134
Klaus Kaestner, Upenn
58
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
15
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
256 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
ChIP-seq
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
4
4
7
pancreatic acinar cell
7
2
4
+ See 2 more…
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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