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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
26
total RNA-seq
14
ATAC-seq
9
DNase-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
Assay category
85
DNA binding
28
Transcription
24
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
32
histone
32
histone modification
21
RNA binding protein
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
144
fastq
142
bam
135
bigWig
102
bed narrowPeak
87
bigBed narrowPeak
26
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
144
Homo sapiens
Biosample type
61
cell line
57
primary cell
26
tissue
Organ
62
pancreas
53
liver
51
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
144
AMP
Genome assembly (visualization)
134
GRCh38
126
hg19
Lab
144
AMP-T2D consortium
Audit category:
18
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
144 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic ductal cell
7
4
4
pancreatic beta cell
10
4
pancreatic alpha cell
10
3
pancreatic acinar cell
4
2
3
pancreatic endocrine cell
4
+ See 1 more…
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
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