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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
26
ATAC-seq
22
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
2
Hi-C
Assay category
62
DNA binding
36
DNA accessibility
31
Transcription
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
31
control
broad histone mark
16
transcription factor
15
narrow histone mark
12
RNA binding protein
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
110
bam
57
bed narrowPeak
53
bigWig
49
fastq
26
bigBed narrowPeak
22
tsv
2
bedpe bed3+
2
hic
Organism
130
Homo sapiens
Biosample type
114
tissue
10
cell line
5
in vitro differentiated cells
2
primary cell
Organ
83
pancreas
24
adipose tissue
24
connective tissue
19
lung
12
epithelium
Project
112
AMP
19
LungMap
Genome assembly (visualization)
81
hg19
79
GRCh38
Lab
112
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
131 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
22
lung
10
9
subcutaneous adipose tissue
12
omental fat pad
11
+ See 3 more…
cell line
EndoC_BH1
7
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
See all biosamples
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