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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
24
total RNA-seq
10
MeRIP-seq
7
ChIP-seq
2
Hi-C
1
DNase-seq
Assay category
28
DNA accessibility
24
Transcription
7
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
7
control
broad histone mark
5
nucleotide modification
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
59
bam
33
bed narrowPeak
30
bigWig
24
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
71
Homo sapiens
Biosample type
44
tissue
16
cell line
6
primary cell
5
in vitro differentiated cells
Organ
59
pancreas
16
epithelium
7
connective tissue
1
adipose tissue
Project
71
AMP
Genome assembly (visualization)
59
hg19
57
GRCh38
Lab
61
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
22
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
71 results
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Clear Filters
ATAC-seq
total RNA-seq
MeRIP-seq
ChIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
6
7
1
primary cell
osteoblast
1
4
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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