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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
20
total RNA-seq
11
ChIP-seq
2
Hi-C
Assay category
34
DNA accessibility
20
Transcription
11
DNA binding
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
broad histone mark
6
narrow histone mark
5
control
1
RNA binding protein
transcription factor
Date released
710
February, 2021
341
May, 2020
307
May, 2021
299
August, 2021
255
August, 2017
252
October, 2019
206
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
112
November, 2017
108
July, 2019
64
March, 2020
59
September, 2020
57
May, 2019
56
September, 2018
54
November, 2019
49
April, 2018
47
September, 2023
42
October, 2018
37
April, 2019
37
December, 2017
31
February, 2018
25
February, 2020
24
November, 2018
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
15
May, 2024
13
October, 2017
12
January, 2019
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
62
bam
37
bed narrowPeak
33
bigWig
20
tsv
11
fastq
4
tagAlign
2
bed broadPeak
2
bedpe bed3+
2
hic
1
bigBed narrowPeak
Organism
67
Homo sapiens
Biosample type
53
tissue
9
cell line
5
in vitro differentiated cells
Organ
53
pancreas
9
epithelium
6
brain
2
adipose tissue
2
connective tissue
1
spleen
Project
67
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
66
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
15
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
20
19
1
brain
5
body of pancreas
4
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
+ See 2 more…
cell line
EndoC_BH1
1
1
6
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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