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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
total RNA-seq
101
ATAC-seq
50
ChIP-seq
10
MeRIP-seq
1
DNase-seq
1
pCHi-C
Assay category
194
Transcription
102
DNA accessibility
50
DNA binding
Target of assay
28
control
27
histone
27
histone modification
27
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
289
bam
265
bigWig
193
tsv
50
tagAlign
29
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
357
Homo sapiens
Biosample type
197
tissue
153
primary cell
7
cell line
Organ
194
liver
10
pancreas
6
connective tissue
6
epithelium
Project
312
AMP
45
T1D
Genome assembly (visualization)
266
hg19
213
GRCh38
Lab
302
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
357 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
DNase-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
4
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
4
1
1
B cell
2
2
+ See 25 more…
cell line
EndoC_BH1
6
HepG2
1
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