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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
101
ATAC-seq
50
ChIP-seq
10
MeRIP-seq
1
DNase-seq
1
pCHi-C
Assay category
102
DNA accessibility
50
DNA binding
Target of assay
28
control
27
histone
27
histone modification
27
narrow histone mark
5
nucleotide modification
Date released
356
November, 2017
236
August, 2021
229
October, 2019
213
August, 2017
210
June, 2019
174
May, 2022
170
February, 2021
151
May, 2020
141
May, 2021
112
February, 2023
88
November, 2018
79
December, 2017
64
July, 2019
62
May, 2019
55
October, 2018
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2023
43
April, 2019
43
September, 2020
35
December, 2018
35
November, 2019
30
September, 2018
21
January, 2019
20
May, 2024
19
April, 2020
16
February, 2018
16
January, 2021
14
May, 2023
13
October, 2017
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
97
bam
73
bigWig
50
tagAlign
29
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
tsv
Organism
163
Homo sapiens
Biosample type
102
primary cell
54
tissue
7
cell line
Organ
51
liver
10
pancreas
6
epithelium
2
connective tissue
Project
163
AMP
Genome assembly (visualization)
74
hg19
21
GRCh38
Lab
153
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
target.investigated_as!
broad histone mark
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
163 results
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Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
DNase-seq
pCHi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 24 more…
tissue
liver
50
islet of Langerhans
4
cell line
EndoC_BH1
6
HepG2
1
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