Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
ATAC-seq
4
Hi-C
3
ChIP-seq
3
total RNA-seq
1
WGBS
Assay category
38
DNA accessibility
4
3D chromatin structure
3
DNA binding
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
3
February, 2020
3
May, 2019
Available data
42
bam
40
bed narrowPeak
35
bigWig
34
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
49
tissue
Organ
854
pancreas
745
liver
636
connective tissue
470
adipose tissue
457
epithelium
331
heart
312
kidney
167
vasculature
161
blood vessel
159
bone element
133
brain
115
artery
76
musculature of body
69
blood
bodily fluid
49
limb
40
eye
33
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
49
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
organ_slims!
bodily fluid
month_released!
October, 2019
BIOSAMPLE
ASSAY
49 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
Hi-C
ChIP-seq
total RNA-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
3
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 8 more…
See all biosamples
Download