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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
31
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
31
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
broad histone mark
1
RNA binding protein
Date released
683
February, 2021
350
November, 2017
341
May, 2020
305
August, 2021
297
May, 2021
279
August, 2017
236
October, 2019
190
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
95
July, 2019
88
November, 2018
67
December, 2017
59
May, 2019
58
March, 2020
55
October, 2018
47
September, 2023
45
November, 2019
43
April, 2019
40
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
13
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
September, 2018
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
96
bed narrowPeak
64
xls
57
txt
39
bam
37
bigWig
14
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
304
Homo sapiens
Biosample type
229
tissue
41
cell line
35
in vitro differentiated cells
Organ
130
kidney
92
heart
33
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
305
AMP
Genome assembly (visualization)
96
GRCh38
51
hg19
Lab
138
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
organ_slims!
epithelium
BIOSAMPLE
ASSAY
305 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
17
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
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