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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
Assay category
30
DNA binding
Target of assay
38
histone
38
histone modification
broad histone mark
18
narrow histone mark
12
transcription factor
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
August, 2017
15
September, 2018
10
November, 2017
3
November, 2018
1
December, 2017
1
October, 2017
Available data
30
bam
30
fastq
28
bed narrowPeak
28
bigWig
13
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
30
Homo sapiens
Biosample type
15
primary cell
13
cell line
1
in vitro differentiated cells
1
tissue
Organ
15
pancreas
13
liver
11
epithelium
1
brain
1
embryo
Project
30
AMP
Genome assembly (visualization)
28
hg19
21
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
30
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
target.investigated_as!
broad histone mark
organ_slims!
gonad
month_released!
August, 2017
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
primary cell
pancreatic ductal cell
7
pancreatic acinar cell
4
pancreatic endocrine cell
4
cell line
HepG2
13
in vitro differentiated cells
pancreatic endoderm
1
tissue
brain
1
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