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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
9
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
broad histone mark
6
narrow histone mark
3
control
Date released
39
June, 2019
August, 2017
10
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
49
bam
47
bigWig
39
bed narrowPeak
39
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
62
Homo sapiens
Biosample type
52
tissue
10
primary cell
Organ
714
liver
712
pancreas
555
connective tissue
457
epithelium
434
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
69
blood
69
bodily fluid
62
musculature of body
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
50
hg19
45
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
target.investigated_as!
broad histone mark
organ_slims!
gonad
month_released!
August, 2017
BIOSAMPLE
ASSAY
62 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
3
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
1
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