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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
pCHi-C
2
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
2
DNA binding
2
Transcription
Target of assay
2
histone
2
histone modification
broad histone mark
1
control
1
narrow histone mark
Date released
4
March, 2020
2
December, 2017
2
March, 2023
January, 2018
Available data
4
tsv
2
bam
2
bed bed3+
2
fastq
1
bed narrowPeak
1
bigWig
Organism
6
Homo sapiens
Biosample type
2467
tissue
966
primary cell
642
cell line
334
in vitro differentiated cells
8
stem cell
Organ
1
connective tissue
Project
6
AMP
2
community
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
6
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
broad histone mark
organ_slims!
gonad
month_released!
January, 2018
BIOSAMPLE
ASSAY
8 results
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pCHi-C
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
stem cell
SB Ad3.1
1
1
hESC
2
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
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