Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
14
ChIP-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
171
Transcription
82
DNA accessibility
14
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
broad histone mark
7
control
7
narrow histone mark
Date released
712
February, 2021
323
May, 2021
277
August, 2021
267
August, 2017
255
October, 2019
208
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
98
July, 2019
62
May, 2019
61
March, 2020
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
49
November, 2017
47
September, 2023
43
April, 2019
35
November, 2018
34
December, 2018
31
February, 2018
26
December, 2017
24
February, 2020
21
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
114
tsv
83
bed narrowPeak
64
xls
57
txt
39
bam
24
bigWig
14
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
276
Homo sapiens
Biosample type
229
tissue
35
in vitro differentiated cells
13
cell line
Organ
130
kidney
92
heart
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
277
AMP
Genome assembly (visualization)
96
GRCh38
37
hg19
Lab
140
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
broad histone mark
organ_slims!
liver
BIOSAMPLE
ASSAY
277 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
See all biosamples
Download