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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
125
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
133
histone modification
132
histone
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
356
November, 2017
341
May, 2020
306
August, 2021
262
May, 2021
245
October, 2019
206
June, 2019
149
February, 2023
146
August, 2017
102
July, 2019
96
May, 2022
81
November, 2018
79
December, 2017
60
May, 2019
50
March, 2020
47
September, 2023
43
April, 2019
40
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
8
October, 2017
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
94
fastq
89
bam
80
bigWig
60
bed narrowPeak
32
tagAlign
15
bed broadPeak
15
bigBed narrowPeak
14
bed bed3+
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
146
Homo sapiens
Biosample type
86
tissue
48
in vitro differentiated cells
12
primary cell
Organ
pancreas
85
connective tissue
37
adipose tissue
35
liver
23
epithelium
14
musculature of body
Project
146
AMP
Genome assembly (visualization)
84
hg19
72
GRCh38
Lab
146
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
organ_slims!
pancreas
BIOSAMPLE
ASSAY
146 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
29
3
1
subcutaneous abdominal adipose tissue
16
3
skeletal muscle tissue
10
4
white adipose tissue
12
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
9
1
2
See all biosamples
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