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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
53
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
53
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
36
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
439
bam
421
bigWig
401
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
6
bed bed3+
4
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
464
Homo sapiens
Biosample type
462
tissue
2
primary cell
1
in vitro differentiated cells
Organ
726
liver
716
pancreas
615
connective tissue
465
adipose tissue
377
epithelium
269
heart
264
kidney
212
brain
147
bone element
145
vasculature
139
blood vessel
82
artery
80
limb
75
musculature of body
68
blood
68
bodily fluid
33
embryo
33
eye
26
nerve
20
lung
20
spleen
18
ureter
13
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
465
AMP
Genome assembly (visualization)
421
GRCh38
420
hg19
Lab
465
AMP-T2D consortium
Audit category:
12
missing controlled_by
target.investigated_as!
broad histone mark
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
465 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
subcutaneous abdominal adipose tissue
16
3
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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