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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
80
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
66
February, 2021
35
February, 2023
27
December, 2018
18
January, 2019
15
November, 2018
12
October, 2019
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
148
bam
126
bigWig
114
bed narrowPeak
65
bigBed narrowPeak
60
fastq
58
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
196
Homo sapiens
Biosample type
127
cell line
59
tissue
10
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
188
AMP
8
T1D
Genome assembly (visualization)
168
GRCh38
134
hg19
Lab
188
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
tissue
coronary artery
5
1
36
2
tibial artery
9
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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