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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
11
DNA binding
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
16
histone
16
histone modification
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
12
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
18
bam
17
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
22
Homo sapiens
Biosample type
97
tissue
66
cell line
22
primary cell
Organ
375
epithelium
319
pancreas
35
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
22
AMP
Genome assembly (visualization)
18
hg19
13
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
8
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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