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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
DNA accessibility
37
DNA binding
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
28
May, 2019
9
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
March, 2020
Available data
43
bam
26
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
14
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
54
Homo sapiens
Biosample type
58
cell line
54
tissue
17
primary cell
Organ
519
connective tissue
460
adipose tissue
382
pancreas
311
liver
190
heart
163
brain
146
bone element
139
kidney
54
blood vessel
54
vasculature
44
limb
32
musculature of body
25
eye
24
nerve
19
spleen
18
artery
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
54
AMP-T2D consortium
target.investigated_as!
broad histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
aorta
6
1
4
2
1
1
thoracic aorta
9
2
ascending aorta
8
2
tibial artery
9
1
coronary artery
5
1
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