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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
37
ChIP-seq
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
43
DNA accessibility
37
DNA binding
6
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
35
February, 2023
28
May, 2019
12
October, 2019
6
August, 2021
4
July, 2019
3
June, 2019
2
March, 2020
Available data
64
bed narrowPeak
47
bam
30
bigWig
26
bigBed narrowPeak
7
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
90
Homo sapiens
Biosample type
90
tissue
20
primary cell
14
cell line
Organ
241
heart
239
kidney
178
brain
175
pancreas
166
liver
96
bone element
90
blood vessel
90
vasculature
81
limb
72
connective tissue
71
adipose tissue
61
musculature of body
57
artery
37
eye
22
nerve
21
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
65
GRCh38
30
hg19
Lab
90
AMP-T2D consortium
target.investigated_as!
broad histone mark
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
90 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
36
5
2
aorta
6
4
2
1
1
tibial artery
1
9
2
thoracic aorta
1
9
ascending aorta
8
1
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