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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ATAC-seq
37
ChIP-seq
11
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
55
DNA accessibility
37
DNA binding
17
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
43
February, 2023
28
May, 2019
12
October, 2019
8
February, 2021
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
72
bed narrowPeak
59
bam
34
bigWig
26
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
4
txt
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
113
Homo sapiens
Biosample type
113
tissue
66
cell line
22
primary cell
Organ
527
connective tissue
468
adipose tissue
464
pancreas
336
liver
289
kidney
256
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
77
GRCh38
46
hg19
Lab
113
AMP-T2D consortium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
113 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
36
5
1
2
aorta
6
1
4
2
1
1
tibial artery
1
9
1
2
thoracic aorta
1
9
2
ascending aorta
8
2
1
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