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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
21
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
43
DNA accessibility
21
DNA binding
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
broad histone mark
18
narrow histone mark
control
3
RNA binding protein
3
transcription factor
Date released
35
February, 2023
17
May, 2019
7
July, 2019
7
October, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
64
bed narrowPeak
35
bam
34
bigWig
26
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
81
Homo sapiens
Biosample type
81
tissue
64
cell line
19
primary cell
Organ
503
connective tissue
444
adipose tissue
435
pancreas
290
liver
283
kidney
240
heart
170
brain
158
bone element
81
blood vessel
81
vasculature
71
limb
62
musculature of body
56
eye
52
artery
20
lung
18
ureter
16
nerve
16
skeleton
15
epithelium
13
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
69
GRCh38
34
hg19
Lab
81
AMP-T2D consortium
target.investigated_as!
broad histone mark
control
BIOSAMPLE
ASSAY
81 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
36
3
1
2
aorta
4
1
4
2
1
1
ascending aorta
5
2
1
thoracic aorta
1
5
2
tibial artery
1
4
1
2
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