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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
34
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
43
DNA accessibility
34
DNA binding
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
transcription factor
Date released
35
February, 2023
25
May, 2019
12
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
61
bed narrowPeak
48
bam
31
bigWig
23
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
94
Homo sapiens
Biosample type
94
tissue
62
cell line
21
primary cell
Organ
510
connective tissue
451
adipose tissue
447
pancreas
297
liver
288
kidney
244
heart
195
brain
158
bone element
94
blood vessel
94
vasculature
88
limb
66
musculature of body
58
artery
56
eye
27
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
66
GRCh38
31
hg19
Lab
94
AMP-T2D consortium
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
94 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
36
4
1
2
aorta
6
1
4
2
1
1
tibial artery
1
9
1
2
thoracic aorta
1
8
2
ascending aorta
7
2
1
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