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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
DNase-seq
8
ChIP-seq
Assay category
9
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
histone
3
histone modification
broad histone mark
2
control
1
RNA binding protein
1
narrow histone mark
Date released
6
February, 2021
5
June, 2019
4
October, 2019
2
November, 2017
Available data
135
bam
107
bigWig
88
bed narrowPeak
68
tsv
38
bigBed narrowPeak
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
17
Homo sapiens
Biosample type
6
cell line
6
primary cell
5
tissue
Organ
118
liver
111
brain
78
kidney
40
musculature of body
36
heart
36
limb
26
epithelium
21
vasculature
20
pancreas
19
connective tissue
18
ureter
17
blood vessel
10
artery
6
adipose tissue
4
eye
2
nerve
2
vein
1
pituitary gland
1
spleen
Project
17
AMP
Genome assembly (visualization)
15
GRCh38
14
hg19
Lab
17
AMP-T2D consortium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
17 results
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DNase-seq
ChIP-seq
cell line
smooth muscle cell of the coronary artery
6
primary cell
brain microvascular endothelial cell
1
2
endothelial cell of umbilical vein
2
kidney capillary endothelial cell
1
tissue
coronary artery
2
tibial artery
2
ascending aorta
1
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