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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
DNase-seq
11
ChIP-seq
Assay category
40
DNA accessibility
11
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
34
June, 2019
10
November, 2017
4
October, 2019
2
November, 2018
1
October, 2017
Available data
313
bam
264
bigWig
227
bed narrowPeak
104
bigBed narrowPeak
94
tsv
79
tagAlign
51
bed broadPeak
46
bigBed broadPeak
44
bed bed3+
15
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
51
Homo sapiens
Biosample type
37
tissue
14
primary cell
Organ
78
kidney
55
liver
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
13
pancreas
11
blood vessel
10
connective tissue
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
51
AMP
Genome assembly (visualization)
50
GRCh38
40
hg19
Lab
51
AMP-T2D consortium
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
51 results
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DNase-seq
ChIP-seq
tissue
brain
14
1
caudate nucleus
1
1
coronary artery
2
frontal cortex
2
tibial artery
2
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
astrocyte of the hippocampus
1
+ See 2 more…
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