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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
68
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
broad histone mark
8
control
7
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
12
October, 2019
8
January, 2021
1
January, 2018
1
March, 2020
Available data
71
bam
63
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
60
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
82
Homo sapiens
Biosample type
61
cell line
21
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
8
T1D
Genome assembly (visualization)
65
hg19
61
GRCh38
Lab
74
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
8
2
2
1
peripheral blood mononuclear cell
8
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