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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
69
total RNA-seq
36
DNase-seq
32
ChIP-seq
14
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
69
Transcription
50
DNA accessibility
32
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
150
February, 2021
39
October, 2019
32
June, 2019
8
February, 2023
5
July, 2019
3
February, 2020
3
May, 2019
1
May, 2021
Available data
140
bam
115
bigWig
88
txt
65
tsv
60
bed narrowPeak
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
241
Homo sapiens
Biosample type
240
tissue
1
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
240
AMP
1
T1D
Genome assembly (visualization)
126
hg19
122
GRCh38
Lab
240
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
241 results
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RNA microarray
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
2
19
1
muscle of arm
17
muscle of leg
13
3
1
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primary cell
megakaryocyte
1
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