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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
38
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
broad histone mark
Date released
24
November, 2017
12
February, 2020
8
October, 2019
6
July, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
28
bam
27
tagAlign
14
tsv
8
bigWig
5
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
60
Homo sapiens
Biosample type
53
tissue
7
primary cell
Organ
302
pancreas
246
liver
226
epithelium
149
kidney
127
heart
93
bone element
90
connective tissue
60
brain
55
eye
47
adipose tissue
41
vasculature
39
blood vessel
31
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
GRCh38
139
hg19
Lab
60
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
assembly!
GRCh38
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
4
1
1
cingulate gyrus
6
substantia nigra
4
1
caudate nucleus
3
1
layer of hippocampus
4
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
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