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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
19
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
37
DNA binding
19
Transcription
3
DNA accessibility
Target of assay
36
histone
36
histone modification
broad histone mark
18
control
16
narrow histone mark
3
transcription factor
Date released
26
October, 2019
12
December, 2017
10
February, 2018
8
August, 2021
2
May, 2021
1
February, 2020
1
January, 2018
Available data
58
bam
40
bigWig
23
fastq
21
bed narrowPeak
19
tsv
10
bigBed narrowPeak
4
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
27
tissue
25
in vitro differentiated cells
8
cell line
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
1
hg18
Lab
60
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
19
5
2
1
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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