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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
14
August, 2017
6
July, 2019
3
March, 2020
3
May, 2019
1
January, 2018
1
May, 2022
Available data
46
bigWig
44
bed narrowPeak
43
bam
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
67
Homo sapiens
Biosample type
59
tissue
8
primary cell
Organ
556
liver
389
pancreas
279
epithelium
214
kidney
192
brain
159
connective tissue
150
heart
124
vasculature
118
blood vessel
97
bone element
81
limb
70
adipose tissue
69
artery
69
blood
69
bodily fluid
67
musculature of body
42
eye
22
nerve
21
spleen
19
embryo
18
ureter
13
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
51
hg19
39
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
target.investigated_as!
broad histone mark
assay_slims!
Transcription
BIOSAMPLE
ASSAY
67 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
3
1
skeletal muscle tissue
10
4
1
1
gastrocnemius medialis
4
psoas muscle
2
1
+ See 2 more…
primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
4
See all biosamples
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