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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
147
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
116
narrow histone mark
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
49
November, 2017
30
June, 2019
18
July, 2019
13
May, 2019
12
February, 2020
5
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
181
bam
161
bigWig
141
bed narrowPeak
72
tagAlign
68
bigBed narrowPeak
42
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
194
tissue
21
primary cell
Organ
831
pancreas
736
liver
623
connective tissue
466
epithelium
459
adipose tissue
339
kidney
336
heart
215
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
32
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
215
AMP
Genome assembly (visualization)
155
GRCh38
138
hg19
Lab
215
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
target.investigated_as!
broad histone mark
nucleotide modification
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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