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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
8
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
29
DNA binding
18
DNA accessibility
Target of assay
49
histone
49
histone modification
broad histone mark
19
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
21
October, 2018
September, 2018
9
August, 2017
5
September, 2017
4
June, 2019
4
October, 2019
3
November, 2018
1
May, 2019
Available data
564
bam
495
bigWig
391
tsv
364
fastq
117
bed narrowPeak
80
zippedFastqFolder
47
bigBed narrowPeak
23
bed bed3+
13
bed broadPeak
11
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
45
Homo sapiens
Biosample type
35
tissue
8
primary cell
4
cell line
Organ
337
liver
92
kidney
69
brain
60
heart
54
blood
54
bodily fluid
50
limb
48
epithelium
47
pancreas
42
vasculature
39
musculature of body
38
blood vessel
24
connective tissue
18
ureter
11
artery
10
adipose tissue
10
nerve
9
spleen
8
vein
6
eye
Project
47
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
47
AMP-T2D consortium
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
nucleotide modification
month_released!
September, 2018
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
15
4
pancreas
5
2
1
endocrine pancreas
6
islet of Langerhans
1
1
primary cell
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic acinar cell
2
cell line
Panc1
3
1
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