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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
142
DNA binding
116
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
122
May, 2021
48
August, 2017
35
August, 2021
32
December, 2017
31
February, 2018
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
232
bam
200
bigWig
110
fastq
109
tsv
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
312
Homo sapiens
Biosample type
1927
tissue
918
primary cell
544
cell line
312
in vitro differentiated cells
9
stem cell
Organ
69
connective tissue
25
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
312
AMP
Genome assembly (visualization)
235
hg19
206
GRCh38
4
hg18
Lab
268
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
97
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
nucleotide modification
month_released!
February, 2021
BIOSAMPLE
ASSAY
312 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
47
1
4
1
1
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
pancreatic endoderm
14
4
1
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