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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
16
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
8
November, 2018
7
December, 2018
3
January, 2019
1
March, 2020
1
October, 2017
Available data
20
bam
20
fastq
12
bigWig
10
bed narrowPeak
9
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
20
Homo sapiens
Biosample type
20
tissue
Organ
850
pancreas
694
liver
630
connective tissue
468
adipose tissue
457
epithelium
306
heart
261
kidney
176
vasculature
174
blood vessel
173
brain
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
38
musculature of body
33
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
11
GRCh38
9
hg19
Lab
20
AMP-T2D consortium
target.investigated_as!
broad histone mark
nucleotide modification
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
16
2
1
1
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