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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
15
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
15
DNA binding
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
12
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
83
bam
66
bigWig
58
tsv
55
bed narrowPeak
10
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
122
Homo sapiens
Biosample type
62
cell line
58
tissue
2
primary cell
Organ
849
pancreas
600
connective tissue
471
epithelium
454
adipose tissue
411
liver
329
kidney
304
heart
213
brain
182
vasculature
177
blood vessel
159
bone element
122
artery
88
limb
76
musculature of body
60
eye
30
embryo
27
nerve
20
lung
18
blood
18
bodily fluid
18
ureter
16
skeleton
15
spleen
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
Genome assembly (visualization)
109
GRCh38
74
hg19
Lab
122
AMP-T2D consortium
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
122 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
2
tissue
coronary artery
1
36
4
2
tibial artery
1
1
9
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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