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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
Assay category
DNA accessibility
74
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
12
August, 2017
2
October, 2019
Available data
2967
bam
2743
bigWig
1586
tsv
1249
bed narrowPeak
1220
fastq
767
bigBed narrowPeak
398
tagAlign
157
txt
109
bed broadPeak
93
zippedFastqFolder
74
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
74
Homo sapiens
Biosample type
54
cell line
20
primary cell
Organ
54
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
74
AMP
Genome assembly (visualization)
74
hg19
57
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
12
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
cell line
HepG2
54
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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