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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
52
single cell RNA-seq
41
WGBS
Assay category
DNA accessibility
74
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
74
May, 2022
60
November, 2017
19
September, 2020
12
August, 2017
2
October, 2019
Available data
2967
bam
2783
bigWig
1586
tsv
1289
bed narrowPeak
1220
fastq
767
bigBed narrowPeak
398
tagAlign
157
txt
109
bed broadPeak
93
zippedFastqFolder
74
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
167
Homo sapiens
Biosample type
113
primary cell
54
cell line
Organ
54
liver
47
epithelium
41
pancreas
6
brain
6
vasculature
4
blood vessel
2
vein
Project
93
HPAP
74
AMP
Genome assembly (visualization)
74
hg19
57
GRCh38
Lab
93
Klaus Kaestner, Upenn
74
AMP-T2D consortium
Audit category:
12
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
single cell RNA-seq
WGBS
primary cell
Langerhans cell
52
pancreatic alpha cell
25
pancreatic beta cell
16
skeletal muscle myoblast
12
astrocyte of the cerebellum
2
+ See 3 more…
cell line
HepG2
54
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