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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
527
ChIP-seq
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
527
DNA binding
127
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
chromatin remodeller
Date released
452
February, 2021
179
August, 2017
170
May, 2020
159
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
34
December, 2017
33
February, 2023
18
March, 2020
13
October, 2017
8
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1485
bam
1484
bigWig
918
tsv
614
bed narrowPeak
330
bigBed narrowPeak
282
fastq
105
tagAlign
36
bed broadPeak
29
bed bed3+
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1586
Homo sapiens
Biosample type
1592
tissue
605
primary cell
498
cell line
293
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
408
pancreas
263
liver
126
brain
88
heart
70
bone element
65
blood vessel
65
vasculature
60
limb
29
musculature of body
29
nerve
27
eye
25
kidney
23
artery
13
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1590
AMP
2
T1D
Genome assembly (visualization)
1680
GRCh38
1592
hg19
Lab
1549
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
1592 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
42
2
1
6
1
liver
147
81
20
1
1
1
bone tissue
58
heart left ventricle
3
29
2
1
1
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