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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
single cell RNA-seq
92
total RNA-seq
48
snATAC-seq
47
WGBS
39
ATAC-seq
3
Hi-C
Assay category
224
Transcription
87
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
3
October, 2022
Available data
159
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
361
Homo sapiens
Biosample type
314
primary cell
47
tissue
Organ
142
epithelium
142
pancreas
47
kidney
Project
1360
AMP
314
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
GRCh38
3
hg19
Lab
314
Klaus Kaestner, Upenn
47
KPMP
Audit category:
30
audit script error
target.investigated_as!
chromatin remodeller
assembly!
GRCh38
BIOSAMPLE
ASSAY
361 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
kidney
47
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