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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
72
ChIP-seq
56
snATAC-seq
41
WGBS
17
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
200
DNA accessibility
184
Transcription
72
DNA binding
52
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
76
February, 2023
57
May, 2021
56
September, 2020
40
February, 2021
17
August, 2017
13
July, 2019
12
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
534
Homo sapiens
Biosample type
759
tissue
534
primary cell
181
cell line
125
in vitro differentiated cells
3
stem cell
Organ
175
epithelium
148
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
308
HPAP
202
AMP
24
T1D
Genome assembly (visualization)
375
hg19
GRCh38
Lab
308
Klaus Kaestner, Upenn
167
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
12
inconsistent ontology term
target.investigated_as!
chromatin remodeller
assembly!
GRCh38
files.file_type!
tsv
BIOSAMPLE
ASSAY
534 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
25
1
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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