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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
63
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
RRBS
5
Hi-C
4
DNase-seq
1
DNAme array
Assay category
211
DNA accessibility
184
Transcription
63
DNA binding
57
DNA methylation
5
3D chromatin structure
Target of assay
34
histone
34
histone modification
28
control
22
broad histone mark
12
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
57
May, 2021
56
September, 2020
46
February, 2021
17
August, 2017
10
July, 2019
8
January, 2021
8
June, 2019
3
October, 2019
3
October, 2022
1
August, 2021
1
May, 2019
1
November, 2017
1
November, 2018
1
September, 2018
Available data
178
fastq
153
zippedFastqFolder
87
bigWig
74
bam
33
bed narrowPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3+
3
bedpe bed3+
3
bigBed narrowPeak
3
cool
3
hic
2
bed broadPeak
2
bigBed broadPeak
2
csv
2
hdf5
2
tagAlign
Organism
537
Homo sapiens
Biosample type
890
tissue
537
primary cell
194
cell line
129
in vitro differentiated cells
7
stem cell
Organ
181
epithelium
154
pancreas
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
314
HPAP
199
AMP
24
T1D
Genome assembly (visualization)
596
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
164
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
30
audit script error
18
inconsistent ontology term
target.investigated_as!
chromatin remodeller
assembly!
GRCh38
organ_slims!
vasculature
BIOSAMPLE
ASSAY
537 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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